Dnbelab c series scrna analysis software
WebNov 4, 2024 · DNBelab_C_Series_HT_scRNA-analysis-software / DNBC4tools.yaml Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. hehehe8813 Version 2.0.7. Latest commit 2f6adc1 Nov 4, 2024 History. WebDNBelab_C_Series_scRNA-analysis-software / scripts / scRNA_cell_calling.R Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. Cannot retrieve contributors at this time.
Dnbelab c series scrna analysis software
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WebAug 13, 2024 · Updated docker image for the open-source and flexible pipeline to analyze the raw fastq files generated by the DNBelabC Series scRNA-seq platform. - GitHub - MGI-EU/Docker-image-of-DNBelabC4_scRNA-analysis: Updated docker image for the open-source and flexible pipeline to analyze the raw fastq files generated by the DNBelabC … WebOct 16, 2024 · Thank you very much for the nice paper. I tried to replicate the analysis for snRNA using DNBelab_C_Series_HT_scRNA-analysis-software. However, it seems I cannot get any information about the files for the parameters of --oligofastq1 and --oligofastq2. Then I turned to use DNBelab_C_Series_scRNA-analysis-software, but it …
WebDNBelab_C_Series_HT_scRNA-analysis-software/doc/quickstart.md Go to file Cannot retrieve contributors at this time 143 lines (111 sloc) 5.54 KB Raw Blame Quick start DNBC4tools conda No source environment is required, use the full path command directly /miniconda3/envs/DNBC4tools/bin/DNBC4tools docker WebDNBelab_C_Series_HT_scRNA-analysis-software/doc/wdl.md Go to file Cannot retrieve contributors at this time 85 lines (63 sloc) 6.1 KB Raw Blame WDL Prepare 1.1 json An input JSON file includes all genomic data files, parameters and metadata for running pipelines. Pipeline will use default values if they are not defined in input JSON file.
WebMay 23, 2024 · By performing the integrated analysis of the Stereo-seq and scRNA-seq data from each time point, we reconstructed the spatially resolved developmental trajectories of cell-fate transitions and molecular changes during zebrafish embryogenesis. WebDNBelab_C_Series_HT_scRNA-analysis-software/doc/Downstream_Analysis.md Go to file Cannot retrieve contributors at this time 209 lines (192 sloc) 7.34 KB Raw Blame Downstream Analysis Load gene expression matrix with R or Python R #' Read feature count matrix generated by `PISA count`.
WebDNBelab_C_Series_scRNA-analysis-software / pipelines / Droplet_single.wdl Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. Cannot retrieve contributors at this time.
DNBelab C Series Single-Cell RNA Analysis Software Introduction Propose An open source and flexible pipeline to analyze DNBelab C Series TM single-cell RNA datasets. Language Workflow Description Language (WDL), Python3 and R scripts. Hardware/Software requirements x86-64 compatible processors … See more psychiatrists who take medicareWebDNBelab_C_Series_scRNA-analysis-software / doc / input.md Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch on this repository, and may belong to a fork … psychiatrists wikipediaWebAs one of MGI's single-cell series products, DNBelab C series HT scRNA library preparation set V2.0 contains the C4 device used for droplet generation, the flow cell for loading , library preparation reagents and data analysis package C4Tools to support the whole process of single cell 3'RNA sequencing data analysis. Currently, based on MGI's ... hospice thrift store brevard ncWebMar 17, 2024 · An open source and flexible pipeline to analyze DNBelab C Series TM single-cell RNA datasets. Language Workflow Description Language (WDL), Python3 … psychiatrists winchester vaWebDec 15, 2024 · Issues · MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software · GitHub MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis … psychiatrists who treat adhdWebDNBelab_C_Series_scRNA-analysis-software / bin / PISA Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. Cannot retrieve contributors at this time. 3.75 MB Download hospice thrift store citrus countyWebNov 4, 2024 · DNBelab_C_Series_HT_scRNA-analysis-software Introduction An open source and flexible pipeline to analyze high-throughput DNBelab C Series TM single-cell RNA datasets. Hardware/Software requirements x86-64 compatible processors. require at least 50GB of RAM and 4 CPU. hospice thrift store clearwater